The weight assigned to the side chain entropy model. The overall score
at each position in the provided sequence is composed of three scores: the
secondary structure prediction score, the side chain entropy score and the
BLAST search score.
By default the weight for the entropy model is 0.5, or half of the secondary structure and BLAST search weights. This is because the cluster pattern analysis provides provides additional emphasis on the side entropies in an indirect way.
These weight may be adjusted if one wished to give more emphasis on one of the three models described above. To give the side chain entropy model more consideration, increase this weight to 0.75, 1.0 or even 1.5.