UCLA MBI — SERp Server: SER Help

Help Topics: Averaging Window BLAST Seq. ID Cutoff BLAST Sequence count weight BLAST Weight BLAST eValue Cutoff Cluster Limit Cluster Sequence Snippet Cluster Sorting Email Address Entropy Cutoff Entropy Weight Gaps Size Graph Size Graphs High Entropy Residues Last Jobs Maximum Mutations Minimum Mutations Mutable Residues Protein or DNA Sequence Queue Status Result Delivery Method Sec. Str. Cutoff Sec. Str. Weight Secondary Structure Prediction Sequence Identifier Sidechain Entropy Target Residues

Residues are grouped into cluster and each cluster is evaluated individually. This parameter specifies the maximum gap size, or the maximum number of non-mutable and non-target residues within a cluster. The default for this parameter is 2 residues, meaning that an interruption by up to two non-mutable, non-target residues is acceptable. Longer gaps will cause the cluster to be split into two. For best results, mutations should be introduced close to each other, with no more than 2 residue gaps.

Molecular Biology Institure at the University of California, Los Angeles.