UCLA MBI — SERp Server: SER Help

Help Topics: Averaging Window BLAST Seq. ID Cutoff BLAST Sequence count weight BLAST Weight BLAST eValue Cutoff Cluster Limit Cluster Sequence Snippet Cluster Sorting Email Address Entropy Cutoff Entropy Weight Gaps Size Graph Size Graphs High Entropy Residues Last Jobs Maximum Mutations Minimum Mutations Mutable Residues Protein or DNA Sequence Queue Status Result Delivery Method Sec. Str. Cutoff Sec. Str. Weight Secondary Structure Prediction Sequence Identifier Sidechain Entropy Target Residues

If checked, the side chain entropy profile is generated for the provides sequence. For each position in the sequence, the side chain entropy is computed using an averaging windows specified (default 3 residues) by considering the closest (window-1)/2 neighbors. The profile is then used to identify residues located in high entropy regions of the protein. There should never be a reason to disable this model.

Molecular Biology Institure at the University of California, Los Angeles.