UCLA MBI — SERp Server: SER Help

Help Topics: Averaging Window BLAST Seq. ID Cutoff BLAST Sequence count weight BLAST Weight BLAST eValue Cutoff Cluster Limit Cluster Sequence Snippet Cluster Sorting Email Address Entropy Cutoff Entropy Weight Gaps Size Graph Size Graphs High Entropy Residues Last Jobs Maximum Mutations Minimum Mutations Mutable Residues Protein or DNA Sequence Queue Status Result Delivery Method Sec. Str. Cutoff Sec. Str. Weight Secondary Structure Prediction Sequence Identifier Sidechain Entropy Target Residues

Cutoff value for the side chain entropy. Residues with a side chain entropy average below this cutoff are considered neutral and will not contribute to the overall score for a position in the sequence. By default the cutoff is 0.2, where 0.0 is the side chain entropy of the lowest-entropy amino acid (Alanine) and 1.0 is the entropy of the highest-entropy amino acid (Glutamine).

Molecular Biology Institure at the University of California, Los Angeles.