UCLA MBI — SERp Server: SER Help

Help Topics: Averaging Window BLAST Seq. ID Cutoff BLAST Sequence count weight BLAST Weight BLAST eValue Cutoff Cluster Limit Cluster Sequence Snippet Cluster Sorting Email Address Entropy Cutoff Entropy Weight Gaps Size Graph Size Graphs High Entropy Residues Last Jobs Maximum Mutations Minimum Mutations Mutable Residues Protein or DNA Sequence Queue Status Result Delivery Method Sec. Str. Cutoff Sec. Str. Weight Secondary Structure Prediction Sequence Identifier Sidechain Entropy Target Residues

A set of residues considered to be mutable. This should be a subset of the "High Entropy Residues" set. Typically it is equal to the "High Entropy Residues", however, if one wishes not to mutate Aspartates then this residue can be removed from this set. Mutations will be introduced in the order listed here. For example, using the default set of "KEQD" and a cluster containing two K's and two and two E's that are otherwise equivalent, mutation of the K's will be preferred as this residue is listed first in this set.

Molecular Biology Institure at the University of California, Los Angeles.