UCLA MBI — SERp Server: SER Help

Help Topics: Averaging Window BLAST Seq. ID Cutoff BLAST Sequence count weight BLAST Weight BLAST eValue Cutoff Cluster Limit Cluster Sequence Snippet Cluster Sorting Email Address Entropy Cutoff Entropy Weight Gaps Size Graph Size Graphs High Entropy Residues Last Jobs Maximum Mutations Minimum Mutations Mutable Residues Protein or DNA Sequence Queue Status Result Delivery Method Sec. Str. Cutoff Sec. Str. Weight Secondary Structure Prediction Sequence Identifier Sidechain Entropy Target Residues

Perform a secondary structure prediction on the provided sequence with PSIPRED to predict coil regions which are presumed to be surface exposed. If checked, the pre diced secondary structure will be taken into account when scoring residues. There should never be a reason to disable this option.

Molecular Biology Institure at the University of California, Los Angeles.